IL_7WTM_031

3D structure

PDB id

7WTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTM_031 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.1863

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

7WTM|1|C2|A|550
7WTM|1|C2|G|551
7WTM|1|C2|G|552
7WTM|1|C2|G|553
7WTM|1|C2|C|554
7WTM|1|C2|A|555
7WTM|1|C2|A|556
7WTM|1|C2|G|557
*
7WTM|1|C2|C|587
7WTM|1|C2|U|588

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain Se

40S ribosomal protein S30-A