3D structure

PDB id
7WTM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UUG*UUA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7WTM_049 not in the Motif Atlas
Geometric match to IL_3GM7_002
Geometric discrepancy: 0.1537
The information below is about IL_3GM7_002
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

7WTM|1|C2|U|893
7WTM|1|C2|U|894
7WTM|1|C2|G|895
*
7WTM|1|C2|U|917
7WTM|1|C2|U|918
7WTM|1|C2|A|919

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SB
40S ribosomal protein S1-A
Chain SO
40S ribosomal protein S14-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.228 s