IL_7WTM_050

3D structure

PDB id

7WTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUCAG*CUUGGAUU

Length

13 nucleotides

Bulged bases

7WTM|1|C2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTM_050 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.2218

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7WTM|1|C2|G|895
7WTM|1|C2|U|896
7WTM|1|C2|C|897
7WTM|1|C2|A|898
7WTM|1|C2|G|899
*
7WTM|1|C2|C|910
7WTM|1|C2|U|911
7WTM|1|C2|U|912
7WTM|1|C2|G|913
7WTM|1|C2|G|914
7WTM|1|C2|A|915
7WTM|1|C2|U|916
7WTM|1|C2|U|917

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S1-A

Chain SO

40S ribosomal protein S14-A