IL_7WTM_056

3D structure

PDB id

7WTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTM_056 not in the Motif Atlas

Geometric match to IL_4V88_440

Geometric discrepancy: 0.0825

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7WTM|1|C2|G|1111
7WTM|1|C2|G|1112
7WTM|1|C2|A|1113
7WTM|1|C2|G|1114
7WTM|1|C2|U|1115
7WTM|1|C2|A|1116
7WTM|1|C2|U|1117
7WTM|1|C2|G|1118
*
7WTM|1|C2|U|1129
7WTM|1|C2|G|1130
7WTM|1|C2|A|1131
7WTM|1|C2|A|1132
7WTM|1|C2|A|1133
7WTM|1|C2|C|1134

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein S23-A