IL_7WTR_011
3D structure
- PDB id
- 7WTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UAUAAC*GCUAAUA
- Length
- 13 nucleotides
- Bulged bases
- 7WTR|1|C2|U|170
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7WTR_011 not in the Motif Atlas
- Geometric match to IL_4LFB_009
- Geometric discrepancy: 0.1867
- The information below is about IL_4LFB_009
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_00680.1
- Basepair signature
- cWW-L-R-tWH-L-R-L-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7WTR|1|C2|U|144
7WTR|1|C2|A|145
7WTR|1|C2|U|146
7WTR|1|C2|A|147
7WTR|1|C2|A|148
7WTR|1|C2|C|149
*
7WTR|1|C2|G|165
7WTR|1|C2|C|166
7WTR|1|C2|U|167
7WTR|1|C2|A|168
7WTR|1|C2|A|169
7WTR|1|C2|U|170
7WTR|1|C2|A|171
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SG
- 40S ribosomal protein S6-A
- Chain SY
- 40S ribosomal protein S24-A
Coloring options: