IL_7WTR_021

3D structure

PDB id

7WTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

7WTR|1|C2|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTR_021 not in the Motif Atlas

Geometric match to IL_4V88_404

Geometric discrepancy: 0.0969

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7WTR|1|C2|G|363
7WTR|1|C2|G|364
7WTR|1|C2|G|365
*
7WTR|1|C2|C|376
7WTR|1|C2|G|377
7WTR|1|C2|A|378
7WTR|1|C2|U|379
7WTR|1|C2|U|380
7WTR|1|C2|C|381

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SJ

40S ribosomal protein S9-A

Chain SX

40S ribosomal protein S23-A