IL_7WTR_053

3D structure

PDB id

7WTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUCAG*CUUGGAUU

Length

13 nucleotides

Bulged bases

7WTR|1|C2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTR_053 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.203

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7WTR|1|C2|G|895
7WTR|1|C2|U|896
7WTR|1|C2|C|897
7WTR|1|C2|A|898
7WTR|1|C2|G|899
*
7WTR|1|C2|C|910
7WTR|1|C2|U|911
7WTR|1|C2|U|912
7WTR|1|C2|G|913
7WTR|1|C2|G|914
7WTR|1|C2|A|915
7WTR|1|C2|U|916
7WTR|1|C2|U|917

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S1-A

Chain SO

40S ribosomal protein S14-A