IL_7WTR_060

3D structure

PDB id

7WTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGAA*UUUG

Length

9 nucleotides

Bulged bases

7WTR|1|C2|G|1150

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTR_060 not in the Motif Atlas

Geometric match to IL_4V88_461

Geometric discrepancy: 0.3719

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

7WTR|1|C2|C|1148
7WTR|1|C2|G|1149
7WTR|1|C2|G|1150
7WTR|1|C2|A|1151
7WTR|1|C2|A|1152
*
7WTR|1|C2|U|1626
7WTR|1|C2|U|1627
7WTR|1|C2|U|1628
7WTR|1|C2|G|1629

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CA

Pre-rRNA-processing protein PNO1

Chain SC

40S ribosomal protein S2