3D structure

PDB id
7WTR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UAC*GAA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7WTR_064 not in the Motif Atlas
Geometric match to IL_4E5C_001
Geometric discrepancy: 0.2063
The information below is about IL_4E5C_001
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10167.6
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
51

Unit IDs

7WTR|1|C2|U|1650
7WTR|1|C2|A|1651
7WTR|1|C2|C|1652
*
7WTR|1|C2|G|1748
7WTR|1|C2|A|1749
7WTR|1|C2|A|1750

Current chains

Chain C2
18S rRNA

Nearby chains

Chain CC
Ribosome biogenesis protein TSR1
Chain SX
40S ribosomal protein S23-A

Coloring options:


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