IL_7WTS_059

3D structure

PDB id

7WTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State UTP14

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTS_059 not in the Motif Atlas

Geometric match to IL_2QWY_009

Geometric discrepancy: 0.2195

The information below is about IL_2QWY_009

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

7WTS|1|2|G|1235
7WTS|1|2|G|1236
*
7WTS|1|2|C|1521
7WTS|1|2|A|1522
7WTS|1|2|C|1523

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

RRP12-like protein

Chain q

Probable 18S rRNA (guanine-N(7))-methyltransferase