IL_7WTT_016

3D structure

PDB id

7WTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

7WTT|1|2|U|305, 7WTT|1|2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTT_016 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3917

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

7WTT|1|2|C|216
7WTT|1|2|A|217
7WTT|1|2|U|218
7WTT|1|2|U|219
*
7WTT|1|2|A|302
7WTT|1|2|C|303
7WTT|1|2|C|304
7WTT|1|2|U|305
7WTT|1|2|C|306
7WTT|1|2|G|307
7WTT|1|2|G|308
7WTT|1|2|G|309

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain I

40S ribosomal protein S8