IL_7WTT_043

3D structure

PDB id

7WTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTT_043 not in the Motif Atlas

Geometric match to IL_3D0U_006

Geometric discrepancy: 0.1418

The information below is about IL_3D0U_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

7WTT|1|2|C|877
7WTT|1|2|G|878
7WTT|1|2|C|879
*
7WTT|1|2|G|907
7WTT|1|2|A|908
7WTT|1|2|G|909

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

40S ribosomal protein S7