IL_7WTT_095
3D structure
- PDB id
- 7WTT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACU*AUUC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7WTT_095 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.2283
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
7WTT|1|2|G|1536
7WTT|1|2|A|1537
7WTT|1|2|C|1538
7WTT|1|2|U|1539
*
7WTT|1|2|A|1594
7WTT|1|2|U|1595
7WTT|1|2|U|1596
7WTT|1|2|C|1597
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- 40S ribosomal protein S5
- Chain S
- 40S ribosomal protein S18
- Chain T
- 40S ribosomal protein S19
- Chain Z
- 40S ribosomal protein S25
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