IL_7WTU_013

3D structure

PDB id

7WTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7WTU|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTU_013 not in the Motif Atlas

Geometric match to IL_4V88_394

Geometric discrepancy: 0.1189

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7WTU|1|2|G|145
7WTU|1|2|G|146
7WTU|1|2|A|147
7WTU|1|2|U|148
7WTU|1|2|A|149
7WTU|1|2|A|150
7WTU|1|2|C|151
*
7WTU|1|2|G|167
7WTU|1|2|C|168
7WTU|1|2|U|169
7WTU|1|2|A|170
7WTU|1|2|A|171
7WTU|1|2|U|172
7WTU|1|2|A|173
7WTU|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24