IL_7WTU_050

3D structure

PDB id

7WTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

7WTU|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTU_050 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.2226

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7WTU|1|2|G|952
7WTU|1|2|C|953
7WTU|1|2|U|954
7WTU|1|2|A|955
7WTU|1|2|G|956
*
7WTU|1|2|C|967
7WTU|1|2|U|968
7WTU|1|2|U|969
7WTU|1|2|G|970
7WTU|1|2|G|971
7WTU|1|2|A|972
7WTU|1|2|C|973
7WTU|1|2|C|974

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain O

40S ribosomal protein S14