IL_7WTU_054

3D structure

PDB id

7WTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAU*GCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTU_054 not in the Motif Atlas

Geometric match to IL_5J7L_283

Geometric discrepancy: 0.1964

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7WTU|1|2|C|1098
7WTU|1|2|G|1099
7WTU|1|2|A|1100
7WTU|1|2|U|1101
*
7WTU|1|2|G|1131
7WTU|1|2|C|1132
7WTU|1|2|A|1133
7WTU|1|2|G|1134

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain N

40S ribosomal protein S13