IL_7WTU_061

3D structure

PDB id

7WTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTU_061 not in the Motif Atlas

Geometric match to IL_6DTD_003

Geometric discrepancy: 0.1524

The information below is about IL_6DTD_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

7WTU|1|2|G|1235
7WTU|1|2|G|1236
*
7WTU|1|2|C|1521
7WTU|1|2|A|1522
7WTU|1|2|C|1523

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

RRP12-like protein

Chain P

40S ribosomal protein S15

Chain S

40S ribosomal protein S18

Chain q

Probable 18S rRNA (guanine-N(7))-methyltransferase

Chain u

Pre-rRNA-processing protein TSR1 homolog