IL_7WTU_083

3D structure

PDB id

7WTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGG*CUA

Length

7 nucleotides

Bulged bases

7WTU|1|2|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTU_083 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1804

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7WTU|1|2|U|1720
7WTU|1|2|U|1721
7WTU|1|2|G|1722
7WTU|1|2|G|1723
*
7WTU|1|2|C|1811
7WTU|1|2|U|1812
7WTU|1|2|A|1813

Current chains

Chain 2

18S rRNA

Nearby chains

Chain u

Pre-rRNA-processing protein TSR1 homolog