IL_7WTU_087
3D structure
- PDB id
- 7WTU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGGAU*AGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7WTU_087 not in the Motif Atlas
- Geometric match to IL_7RQB_075
- Geometric discrepancy: 0.1082
- The information below is about IL_7RQB_075
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_56467.8
- Basepair signature
- cWW-tSH-tSH-tHS-cWW
- Number of instances in this motif group
- 29
Unit IDs
7WTU|1|2|C|1742
7WTU|1|2|G|1743
7WTU|1|2|G|1744
7WTU|1|2|A|1745
7WTU|1|2|U|1746
*
7WTU|1|2|A|1788
7WTU|1|2|G|1789
7WTU|1|2|A|1790
7WTU|1|2|A|1791
7WTU|1|2|G|1792
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain G
- 40S ribosomal protein S6
- Chain I
- 40S ribosomal protein S8
Coloring options: