IL_7WTU_088

3D structure

PDB id

7WTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

7WTU|1|2|C|1783

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTU_088 not in the Motif Atlas

Geometric match to IL_5TBW_002

Geometric discrepancy: 0.378

The information below is about IL_5TBW_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

7WTU|1|2|C|1750
7WTU|1|2|C|1751
*
7WTU|1|2|G|1782
7WTU|1|2|C|1783
7WTU|1|2|G|1784

Current chains

Chain 2

18S rRNA

Nearby chains