IL_7WTV_059

3D structure

PDB id

7WTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTV_059 not in the Motif Atlas

Geometric match to IL_3GM7_005

Geometric discrepancy: 0.1427

The information below is about IL_3GM7_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7WTV|1|2|C|1230
7WTV|1|2|C|1231
7WTV|1|2|U|1232
*
7WTV|1|2|G|1526
7WTV|1|2|C|1527
7WTV|1|2|G|1528

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

RRP12-like protein

Chain T

40S ribosomal protein S19

Chain q

Probable 18S rRNA (guanine-N(7))-methyltransferase