IL_7WTW_034

3D structure

PDB id

7WTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

7WTW|1|2|A|628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTW_034 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.1791

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7WTW|1|2|G|611
7WTW|1|2|U|612
7WTW|1|2|G|613
7WTW|1|2|C|614
7WTW|1|2|C|615
7WTW|1|2|A|616
7WTW|1|2|G|617
*
7WTW|1|2|C|624
7WTW|1|2|G|625
7WTW|1|2|G|626
7WTW|1|2|U|627
7WTW|1|2|A|628
7WTW|1|2|A|629
7WTW|1|2|U|630
7WTW|1|2|U|631
7WTW|1|2|C|632

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain t

Protein LTV1 homolog

Chain u

Pre-rRNA-processing protein TSR1 homolog