IL_7WTX_063

3D structure

PDB id

7WTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTX_063 not in the Motif Atlas

Geometric match to IL_2QWY_009

Geometric discrepancy: 0.1404

The information below is about IL_2QWY_009

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

7WTX|1|2|G|1235
7WTX|1|2|G|1236
*
7WTX|1|2|C|1521
7WTX|1|2|A|1522
7WTX|1|2|C|1523

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S15

Chain S

40S ribosomal protein S18

Chain u

Pre-rRNA-processing protein TSR1 homolog