IL_7WTZ_017

3D structure

PDB id

7WTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

7WTZ|1|2|U|305, 7WTZ|1|2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTZ_017 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3827

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

7WTZ|1|2|C|216
7WTZ|1|2|A|217
7WTZ|1|2|U|218
7WTZ|1|2|U|219
*
7WTZ|1|2|A|302
7WTZ|1|2|C|303
7WTZ|1|2|C|304
7WTZ|1|2|U|305
7WTZ|1|2|C|306
7WTZ|1|2|G|307
7WTZ|1|2|G|308
7WTZ|1|2|G|309

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain I

40S ribosomal protein S8