IL_7WTZ_061

3D structure

PDB id

7WTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

7WTZ|1|2|C|1215, 7WTZ|1|2|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTZ_061 not in the Motif Atlas

Geometric match to IL_4V88_443

Geometric discrepancy: 0.136

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

7WTZ|1|2|A|1214
7WTZ|1|2|C|1215
7WTZ|1|2|C|1216
7WTZ|1|2|A|1217
*
7WTZ|1|2|U|1681
7WTZ|1|2|C|1682
7WTZ|1|2|C|1683
7WTZ|1|2|C|1684
7WTZ|1|2|U|1685

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain c

40S ribosomal protein S28