IL_7WU0_065

3D structure

PDB id

7WU0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAUG

Length

6 nucleotides

Bulged bases

7WU0|1|2|A|1508, 7WU0|1|2|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WU0_065 not in the Motif Atlas

Geometric match to IL_5TBW_136

Geometric discrepancy: 0.2224

The information below is about IL_5TBW_136

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7WU0|1|2|C|1272
7WU0|1|2|C|1273
*
7WU0|1|2|G|1507
7WU0|1|2|A|1508
7WU0|1|2|U|1509
7WU0|1|2|G|1510

Current chains

Chain 2

18S rRNA

Nearby chains

Chain f

Ubiquitin-40S ribosomal protein S27a

Chain u

Pre-rRNA-processing protein TSR1 homolog

Chain w

Bystin