IL_7XNX_167

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

7XNX|1|L1|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNX_167 not in the Motif Atlas

Homologous match to IL_5TBW_120

Geometric discrepancy: 0.2426

The information below is about IL_5TBW_120

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

7XNX|1|L1|A|4681
7XNX|1|L1|U|4682
7XNX|1|L1|U|4683
7XNX|1|L1|A|4684
7XNX|1|L1|U|4685
*
7XNX|1|L1|A|4705
7XNX|1|L1|G|4706
7XNX|1|L1|A|4707
7XNX|1|L1|A|4708
7XNX|1|L1|U|4709

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40