IL_7XNX_255
3D structure
- PDB id
- 7XNX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 7XNX|1|S2|C|1215, 7XNX|1|S2|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7XNX_255 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.1189
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
7XNX|1|S2|A|1214
7XNX|1|S2|C|1215
7XNX|1|S2|C|1216
7XNX|1|S2|A|1217
*
7XNX|1|S2|U|1681
7XNX|1|S2|C|1682
7XNX|1|S2|C|1683
7XNX|1|S2|C|1684
7XNX|1|S2|U|1685
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CC
- Transfer RNA; tRNA
- Chain SF
- 40S ribosomal protein S5
- Chain SQ
- 40S ribosomal protein S16
- Chain SR
- 40S ribosomal protein S17
- Chain Sa
- 40S ribosomal protein S26
- Chain Sc
- 40S ribosomal protein S28
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