IL_7XNX_293

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAC*GGUCG

Length

9 nucleotides

Bulged bases

7XNX|1|L1|C|1202

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNX_293 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2507

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7XNX|1|L1|C|1093
7XNX|1|L1|G|1094
7XNX|1|L1|A|1095
7XNX|1|L1|C|1096
*
7XNX|1|L1|G|1199
7XNX|1|L1|G|1200
7XNX|1|L1|U|1201
7XNX|1|L1|C|1202
7XNX|1|L1|G|1203

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain LT

60S ribosomal protein L21