IL_7XNY_024

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

7XNY|1|L1|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|L1|A|466
7XNY|1|L1|U|467
7XNY|1|L1|U|468
7XNY|1|L1|C|469
7XNY|1|L1|A|470
7XNY|1|L1|A|471
7XNY|1|L1|C|472
*
7XNY|1|L1|G|682
7XNY|1|L1|C|683
7XNY|1|L1|G|684
7XNY|1|L1|C|685
7XNY|1|L1|A|686
7XNY|1|L1|U|687
7XNY|1|L1|U|688
7XNY|1|L1|U|689

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Lr

60S ribosomal protein L28