IL_7XNY_029

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGCG*CCCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_029 not in the Motif Atlas

Geometric match to IL_4QIK_001

Geometric discrepancy: 0.3852

The information below is about IL_4QIK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7XNY|1|L1|G|496
7XNY|1|L1|G|497
7XNY|1|L1|C|498
7XNY|1|L1|G|499
*
7XNY|1|L1|C|655
7XNY|1|L1|C|656
7XNY|1|L1|C|657
7XNY|1|L1|C|658

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4