IL_7XNY_049

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_049 not in the Motif Atlas

Geometric match to IL_5UNE_009

Geometric discrepancy: 0.2003

The information below is about IL_5UNE_009

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

7XNY|1|L1|G|1094
7XNY|1|L1|A|1095
7XNY|1|L1|C|1096
*
7XNY|1|L1|G|1199
7XNY|1|L1|G|1200
7XNY|1|L1|U|1201

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain LT

60S ribosomal protein L21