IL_7XNY_054

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGAUC*G(JMH)GCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: JMH

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_054 not in the Motif Atlas

Geometric match to IL_1M5K_001

Geometric discrepancy: 0.3643

The information below is about IL_1M5K_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.2

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

7XNY|1|L1|G|1425
7XNY|1|L1|G|1426
7XNY|1|L1|A|1427
7XNY|1|L1|U|1428
7XNY|1|L1|C|1429
*
7XNY|1|L1|G|1455
7XNY|1|L1|JMH|1456
7XNY|1|L1|G|1457
7XNY|1|L1|C|1458
7XNY|1|L1|A|1459
7XNY|1|L1|C|1460

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain Lb

60S ribosomal protein L29