IL_7XNY_076

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UUGG*UCA

Length

7 nucleotides

Bulged bases

7XNY|1|L1|U|1757

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_076 not in the Motif Atlas

Geometric match to IL_6F4H_001

Geometric discrepancy: 0.3037

The information below is about IL_6F4H_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

7XNY|1|L1|U|1756
7XNY|1|L1|U|1757
7XNY|1|L1|G|1758
7XNY|1|L1|G|1759
*
7XNY|1|L1|U|1773
7XNY|1|L1|C|1774
7XNY|1|L1|A|1775

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

Ribosomal protein L10 isoform A