3D structure

PDB id
7XNY (explore in PDB, NAKB, or RNA 3D Hub)
Description
High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
GACCCCAGAAAA*UGAAAAUGGAUGGCGC
Length
28 nucleotides
Bulged bases
7XNY|1|L1|C|1935, 7XNY|1|L1|A|2041
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7XNY_085 not in the Motif Atlas
Geometric match to IL_5TBW_052
Geometric discrepancy: 0.1521
The information below is about IL_5TBW_052
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_53762.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

7XNY|1|L1|G|1933
7XNY|1|L1|A|1934
7XNY|1|L1|C|1935
7XNY|1|L1|C|1936
7XNY|1|L1|C|1937
7XNY|1|L1|C|1938
7XNY|1|L1|A|1939
7XNY|1|L1|G|1940
7XNY|1|L1|A|1941
7XNY|1|L1|A|1942
7XNY|1|L1|A|1943
7XNY|1|L1|A|1944
*
7XNY|1|L1|U|2038
7XNY|1|L1|G|2039
7XNY|1|L1|A|2040
7XNY|1|L1|A|2041
7XNY|1|L1|A|2042
7XNY|1|L1|A|2043
7XNY|1|L1|U|2044
7XNY|1|L1|G|2045
7XNY|1|L1|G|2046
7XNY|1|L1|A|2047
7XNY|1|L1|U|2048
7XNY|1|L1|G|2049
7XNY|1|L1|G|2050
7XNY|1|L1|C|2051
7XNY|1|L1|G|2052
7XNY|1|L1|C|2053

Current chains

Chain L1
28S rRNA

Nearby chains

Chain L2
5S ribosomal RNA; 5S rRNA
Chain LB
60S ribosomal protein L3
Chain LI
Ribosomal protein L10 isoform A
Chain LO
60S ribosomal protein L13a
Chain Lf
60S ribosomal protein L35a
Chain Lm
Ubiquitin-60S ribosomal protein L40

Coloring options:


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