IL_7XNY_112

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

7XNY|1|L1|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_112 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.0797

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

7XNY|1|L1|A|2850
7XNY|1|L1|G|2851
7XNY|1|L1|U|2852
7XNY|1|L1|C|2853
7XNY|1|L1|G|2854
7XNY|1|L1|G|2855
*
7XNY|1|L1|C|3837
7XNY|1|L1|U|3838
7XNY|1|L1|G|3839
7XNY|1|L1|U|3840

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23