IL_7XNY_113

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

7XNY|1|L1|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_113 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.074

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

7XNY|1|L1|C|2867
7XNY|1|L1|G|2868
7XNY|1|L1|U|2869
7XNY|1|L1|A|2870
7XNY|1|L1|A|2871
7XNY|1|L1|C|2872
*
7XNY|1|L1|G|2877
7XNY|1|L1|G|2878
7XNY|1|L1|A|2879
7XNY|1|L1|U|2880
7XNY|1|L1|A|2881
7XNY|1|L1|A|2882
7XNY|1|L1|G|2883

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA