IL_7XNY_121

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

7XNY|1|L1|A|3663, 7XNY|1|L1|U|3679, 7XNY|1|L1|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_121 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0668

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7XNY|1|L1|C|3660
7XNY|1|L1|G|3661
7XNY|1|L1|A|3662
7XNY|1|L1|A|3663
7XNY|1|L1|G|3664
7XNY|1|L1|G|3665
*
7XNY|1|L1|U|3677
7XNY|1|L1|G|3678
7XNY|1|L1|U|3679
7XNY|1|L1|U|3680
7XNY|1|L1|G|3681
7XNY|1|L1|A|3682
7XNY|1|L1|C|3683
7XNY|1|L1|G|3684

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA