IL_7XNY_129

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)U*A(OMC)GCG

Length

18 nucleotides

Bulged bases

7XNY|1|L1|C|3791, 7XNY|1|L1|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_129 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.5064

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7XNY|1|L1|C|3781
7XNY|1|L1|5MC|3782
7XNY|1|L1|A|3783
7XNY|1|L1|A|3784
7XNY|1|L1|A2M|3785
7XNY|1|L1|U|3786
7XNY|1|L1|G|3787
7XNY|1|L1|C|3788
7XNY|1|L1|C|3789
7XNY|1|L1|U|3790
7XNY|1|L1|C|3791
7XNY|1|L1|OMG|3792
7XNY|1|L1|U|3793
*
7XNY|1|L1|A|3807
7XNY|1|L1|OMC|3808
7XNY|1|L1|G|3809
7XNY|1|L1|C|3810
7XNY|1|L1|G|3811

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA