IL_7XNY_158

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

7XNY|1|L1|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_158 not in the Motif Atlas

Geometric match to IL_4WF9_054

Geometric discrepancy: 0.3676

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7XNY|1|L1|C|4582
7XNY|1|L1|C|4583
7XNY|1|L1|A|4584
7XNY|1|L1|U|4585
*
7XNY|1|L1|A|4717
7XNY|1|L1|G|4718
7XNY|1|L1|G|4719
7XNY|1|L1|C|4720
7XNY|1|L1|G|4721

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a