IL_7XNY_246
3D structure
- PDB id
- 7XNY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 7XNY|1|S2|C|1153, 7XNY|1|S2|U|1155, 7XNY|1|S2|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7XNY_246 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.092
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7XNY|1|S2|C|1091
7XNY|1|S2|G|1092
7XNY|1|S2|A|1093
*
7XNY|1|S2|U|1152
7XNY|1|S2|C|1153
7XNY|1|S2|U|1154
7XNY|1|S2|U|1155
7XNY|1|S2|U|1156
7XNY|1|S2|G|1157
7XNY|1|S2|G|1158
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SC
- 40S ribosomal protein S2
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
- Chain Sb
- 40S ribosomal protein S27
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