3D structure

PDB id
7XNY (explore in PDB, NAKB, or RNA 3D Hub)
Description
High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
CGAU*GCAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7XNY_247 not in the Motif Atlas
Homologous match to IL_4V88_438
Geometric discrepancy: 0.1335
The information below is about IL_4V88_438
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
55

Unit IDs

7XNY|1|S2|C|1098
7XNY|1|S2|G|1099
7XNY|1|S2|A|1100
7XNY|1|S2|U|1101
*
7XNY|1|S2|G|1131
7XNY|1|S2|C|1132
7XNY|1|S2|A|1133
7XNY|1|S2|G|1134

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SA
40S ribosomal protein SA
Chain SB
40S ribosomal protein S3a
Chain SN
40S ribosomal protein S13
Chain SR
40S ribosomal protein S17
Chain Sa
40S ribosomal protein S26
Chain Sb
40S ribosomal protein S27

Coloring options:


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