IL_7XNY_274

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7XNY|1|S2|C|1701, 7XNY|1|S2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_274 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.1408

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

7XNY|1|S2|C|1700
7XNY|1|S2|C|1701
7XNY|1|S2|G|1702
*
7XNY|1|S2|C|1833
7XNY|1|S2|A|1834
7XNY|1|S2|A|1835
7XNY|1|S2|G|1836

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SQ

40S ribosomal protein S16

Chain Sa

40S ribosomal protein S26