IL_7XNY_299

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_299 not in the Motif Atlas

Homologous match to IL_8P9A_316

Geometric discrepancy: 0.2161

The information below is about IL_8P9A_316

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7XNY|1|L1|PSU|3715
7XNY|1|L1|C|3716
7XNY|1|L1|A|3717
7XNY|1|L1|A2M|3718
7XNY|1|L1|A|3719
7XNY|1|L1|G|3720
7XNY|1|L1|U|3721
*
7XNY|1|L1|A|3732
7XNY|1|L1|A|3733
7XNY|1|L1|U|3734
7XNY|1|L1|G|3735
7XNY|1|L1|A|3736
7XNY|1|L1|A|3737
7XNY|1|L1|G|3738

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a