IL_7XNY_318

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

G(UY1)G*CC

Length

5 nucleotides

Bulged bases

7XNY|1|S2|UY1|1326

QA status

Modified nucleotides: UY1

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_318 not in the Motif Atlas

Homologous match to IL_8C3A_455

Geometric discrepancy: 0.1068

The information below is about IL_8C3A_455

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

7XNY|1|S2|G|1325
7XNY|1|S2|UY1|1326
7XNY|1|S2|G|1327
*
7XNY|1|S2|C|1502
7XNY|1|S2|C|1503

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SK

40S ribosomal protein S10

Chain Sd

40S ribosomal protein S29