IL_7Y41_092

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGUG*CAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y41_092 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.2762

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7Y41|1|A|G|2130
7Y41|1|A|G|2131
7Y41|1|A|U|2132
7Y41|1|A|G|2133
*
7Y41|1|A|C|2145
7Y41|1|A|A|2146
7Y41|1|A|U|2147
7Y41|1|A|C|2148

Current chains

Chain A

23S ribosomal RNA

Nearby chains