IL_7Y7D_101

3D structure

PDB id

7Y7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

7Y7D|1|a|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y7D_101 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.0619

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

7Y7D|1|a|U|1018
7Y7D|1|a|U|1019
7Y7D|1|a|A|1020
7Y7D|1|a|A|1021
7Y7D|1|a|G|1022
7Y7D|1|a|U|1023
7Y7D|1|a|G|1024
*
7Y7D|1|a|C|1140
7Y7D|1|a|U|1141
7Y7D|1|a|A|1142
7Y7D|1|a|A|1143
7Y7D|1|a|A|1144

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain i

50S ribosomal protein L13