IL_7Y7E_134

3D structure

PDB id

7Y7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7Y7E|1|a|A|1801, 7Y7E|1|a|C|1816, 7Y7E|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y7E_134 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0667

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7Y7E|1|a|U|1798
7Y7E|1|a|G|1799
7Y7E|1|a|C|1800
7Y7E|1|a|A|1801
7Y7E|1|a|A|1802
7Y7E|1|a|A|1803
7Y7E|1|a|C|1804
*
7Y7E|1|a|G|1813
7Y7E|1|a|G|1814
7Y7E|1|a|A|1815
7Y7E|1|a|C|1816
7Y7E|1|a|G|1817
7Y7E|1|a|U|1818
7Y7E|1|a|A|1819
7Y7E|1|a|U|1820
7Y7E|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2