IL_7Y7H_133

3D structure

PDB id

7Y7H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.51 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7Y7H|1|a|A|1801, 7Y7H|1|a|C|1816, 7Y7H|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Y7H_133 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.056

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7Y7H|1|a|U|1798
7Y7H|1|a|G|1799
7Y7H|1|a|C|1800
7Y7H|1|a|A|1801
7Y7H|1|a|A|1802
7Y7H|1|a|A|1803
7Y7H|1|a|C|1804
*
7Y7H|1|a|G|1813
7Y7H|1|a|G|1814
7Y7H|1|a|A|1815
7Y7H|1|a|C|1816
7Y7H|1|a|G|1817
7Y7H|1|a|U|1818
7Y7H|1|a|A|1819
7Y7H|1|a|U|1820
7Y7H|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2