IL_7YLA_034

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

7YLA|1|I|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7YLA_034 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.0532

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

7YLA|1|I|U|1018
7YLA|1|I|U|1019
7YLA|1|I|A|1020
7YLA|1|I|A|1021
7YLA|1|I|G|1022
7YLA|1|I|U|1023
7YLA|1|I|G|1024
*
7YLA|1|I|C|1140
7YLA|1|I|U|1141
7YLA|1|I|A|1142
7YLA|1|I|A|1143
7YLA|1|I|A|1144

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain R

50S ribosomal protein L13

Chain m

50S ribosomal protein L36